Control track and group visibility more selectively below.
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
All Gaps |
| All gaps of unknown nucleotides (N's), including AGP annotated gaps |
Assembly |
| Assembly |
Gap (AGP defined) |
| AGP gap |
Gap Overlaps |
| Exactly identical sequence on each side of a gap |
GC Percent |
| GC Percent in 5-Base Windows |
Short Match |
| Perfect Matches to Short Sequence () |
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Ensembl genes |
| Ensembl genes v86 |
Augustus |
| Augustus Gene Predictions |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
RNAseq |
| RNAseq analysis and raw data |
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Mice Strains |
| Cactus alignments, 17 mice strains plus rat |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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